Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.
See which versions of are available:
$ module avail salmon
Load one version of into your environment and run it:
$ module load salmon/1.10.0 $ salmon -h
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/COMBINE-lab/salmon/releases/download/v1.10.0/salmon-1.10.0_linux_x86_64.tar.gz $ tar xf salmon-1.10.0_linux_x86_64.tar.gz $ sudo cp -r salmon-latest_linux_x86_64 /export/apps/salmon/1.10.0