Sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads.

• Version: 0.9.2
• Added: March, 2016
• Link: http://www.cs.cmu.edu/~ckingsf/software/sailfish

See which versions of sailfish are available:

$ module avail sailfish

Load sailfish

$ module load sailfish/0.9.2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/kingsfordgroup/sailfish/archive/v0.9.2.tar.gz
$ tar -xvf v0.9.2.tar.gz
$ cd sailfish-0.9.2/
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/sailfish/0.9.2
$ sudo chown joguya:joguya /export/apps/sailfish/0.9.2
$ cmake -DCMAKE_INSTALL_PREFIX=/export/apps/sailfish/0.9.2 -DFETCH_BOOST=TRUE
$ make
$ make install
$ sudo chown -R root:root /export/apps/sailfish/0.9.2