RSEM

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.

• Version: 1.3.3
• Added: February, 2015
• Updated: July, 2025
• Link: https://deweylab.github.io/RSEM/

Show all available versions:

$ module avail RSEM

Load one version into your environment:

$ module load RSEM/1.3.3

Notes from the sysadmin during installation:

$ cd /var/scratch
$ wget https://github.com/deweylab/RSEM/archive/v1.3.3.tar.gz
$ tar xf v1.3.3.tar.gz
$ cd RSEM-1.3.3
$ make
$ sudo mkdir -p /export/apps/RSEM/1.3.3
$ sudo chown aorth /export/apps/RSEM/1.3.3
$ make prefix=/export/apps/RSEM/1.3.3 install
$ sudo chown -R root:root /export/apps/RSEM/1.3.3