rRNASelector

rRNASelector selects rRNA genes from metagenomic and metatranscriptomic sequences.

• Version: 1.1
• Added: December, 2015
• Link: http://www.ezbiocloud.net/sw/rrnaselector

See versions of rRNASelector which are available:

$ module avail rrnaselector

Load and run rRNASelector:

$ module load rrnaselector/1.1
$ rnaselector

Notes from the sysadmin during installation:

$ cd /tmp
$ wget "http://www.ezbiocloud.net/mod_download_sw.jsp?key=rrnaselector&fn=rRNASelector_for_linux.zip" -O rRNASelector_for_linux.zip
$ unzip  rRNASelector_for_linux.zip
$ sudo mkdir -p /export/apps/rrnaselector/1.1/
$ sudo cp -r . /export/apps/rrnaselector/1.1/

I created a wrapper shell script named rnaselector to run RNASelector, otherwise, you'll have to specify the path to RNASelector.jar, which is not always friendly & easy to most users. /export/apps/rrnaselector/1.1/rnaselector

#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)
java -jar $PREFIX/RNAselector.jar $*