recon

De Novo Repeat Finder. Patched and updated by the RepeatMasker team.

• Version: 1.0.8
• Added: March, 2021
• Link: http://repeatmasker.org

See versions of recon which are available:

$ module avail recon

Load one version into your environment and run it:

$ module load recon/1.08
$ recon.pl

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://www.repeatmasker.org/RepeatModeler/RECON-1.08.tar.gz
$ tar xf RECON-1.08.tar.gz 
$ cd RECON-1.08/src
$ make
$ make install
$ cd ..
$ sudo mkdir -p /export/apps/recon/1.08
$ sed 's_$path = "";_$path = "/export/apps/recon/1.08/bin";_' scripts/recon.pl
$ sudo cp -r * /export/apps/recon/1.08