RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees.
Show all available versions of RAxML:
$ module avail RAxML
Load one version into your environment and run it:
$ module load RAxML/8.2.12 $ raxmlHPC-PTHREADS-AVX
Note: you should set the number of concurrent CPU threads using the -T option. For example, if you have requested five CPUs in your SLURM batch script, you can tell RAxML to use five threads:
$ raxmlHPC-PTHREADS-AVX -T 5
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/stamatak/standard-RAxML/archive/v8.2.12.tar.gz $ tar xf v8.2.12.tar.gz $ cd standard-RAxML-8.2.12 $ make -f Makefile.SSE3.gcc $ make -f Makefile.SSE3.PTHREADS.gcc $ make -f Makefile.AVX.gcc $ make -f Makefile.AVX.PTHREADS.gcc $ sudo mkdir -p /export/apps/RAxML/8.2.12/bin $ sudo cp raxmlHPC-* /export/apps/RAxML/8.2.12/bin