rapsearch

RAPSearch stands for Reduced Alphabet based Protein similarity Search.

• Version: 2.22
• Added: May, 2020
• Link: https://omics.informatics.indiana.edu/mg/RAPSearch2/

See versions of rapsearch which are available:

$ module avail rapsearch

Load one version into your environment and run it:

$ module load rapsearch/2.22
$ rapsearch

Note: be sure to set the -z parameter if you want to use more than one thread. The number you use here should match the number of CPUs you request in your SLURM batch job.

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/zhaoyanswill/RAPSearch2.git
$ cd RAPSearch2/Src
$ make
$ sudo mkdir -p /export/apps/rapsearch2/2.22/bin
$ sudo cp prerapsearch rapsearch /export/apps/rapsearch2/2.22/bin