Quorum

Quorum (Quality Optimized Reads from the University of Maryland) is an error corrector for Illumina reads.

• Latest version: 1.1.1
• Added: March, 2017
• Link: https://github.com/gmarcais/Quorum/

See versions of Quorum which are available:

$ module avail quorum

Load and run quorum:

$ module load quorum
$ quorum --help

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- https://github.com/gmarcais/Quorum/releases/download/v1.1.1/quorum-1.1.1.tar.gz | tar xzv
$ cd quorum-1.1.1/
$ scl enable devtoolset-3 bash
$ sudo mkdir -p /export/apps/quorum/1.1.1/
$ sudo chown -R joguya:joguya /export/apps/quorum/1.1.1/
$ module load jellyfish/2.2.6
$ PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/export/apps/jellyfish/2.2.6/lib/pkgconfig ./configure --prefix=/export/apps/quorum/1.1.1/
$ make -j4
$ make install
$ sudo chown -R roo t:root /export/apps/quorum/1.1.1/