A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
See versions of quickmerge which are available:
$ module avail quickmerge
Load one version into your environment and run it:
$ module load quickmerge/0.3 $ quickmerge $ merge_wrapper.py
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/mahulchak/quickmerge/archive/v0.3.tar.gz $ tar xf v0.3.tar.gz $ cd quickmerge-0.3 $ scl enable devtoolset-7 bash $ sudo mkdir -p /export/apps/quickmerge/0.3 $ sudo cp merge_wrapper.py merger/quickmerge /export/apps/quickmerge/0.3