PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data. It generates summary statistics of your sequences in graphical and tabular format. It is easily configurable and provides a user-friendly interface.
See versions of prinseq which are available:
$ module avail prinseq
Load a particular version into your environment and run it:
$ module load prinseq/0.20.4 $ prinseq-lite.pl
Notes from the sysadmin during installation:
$ cd /tmp $ wget 'https://downloads.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fprinseq%2Ffiles%2Flatest%2Fdownload&ts=1587454520' -O prinseq-lite-0.20.4.tar.gz $ tar xf prinseq-lite-0.20.4.tar.gz $ cd prinseq-lite-0.20.4 $ chmod +x *.pl $ sudo mkdir -p /export/apps/prinseq/0.20.4 $ sudo cp -r * /export/apps/prinseq/0.20.4