pRESTO

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of lymphocyte repertoires.

• Version: 0.5.13
• Added: June, 2016
• Updated: March, 2020
• Link: https://presto.readthedocs.io

See which versions of presto are available:

$ module avail presto

Load a version of presto into your environment:

$ module load presto/0.5.13

Notes from the sysadmin during installation:

$ scl enable devtoolset-7 bash
$ sudo mkdir -p /export/apps/presto/0.5.13
$ sudo chown aorth /export/apps/presto/0.5.13
$ python3.6m -m venv /export/apps/presto/0.5.13
$ source /export/apps/presto/0.5.13/bin/activate
$ pip install --upgrade setuptools pip
$ pip install presto
$ sudo chown -R root:root /export/apps/presto/0.5.13