PhyML

Phylogenetic estimation using Maximum Likelihood.

• Version: 3.3.20180621
• Added: September, 2018
• Link: https://github.com/stephaneguindon/phyml

See versions of phyml which are available:

$ module avail phyml

Load one version into your environment and run it:

$ module load phyml/3.3.20180621
$ phyml

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/stephaneguindon/phyml/archive/v3.3.20180621.tar.gz
$ tar xf v3.3.20180621.tar.gz
$ cd phyml-3.3.20180621
$ ./configure --enable-phyml --prefix=/export/apps/phyml/3.3.20180621
$ make
$ sudo mkdir -p /export/apps/phyml/3.3.20180621
$ sudo chown aorth /export/apps/phyml/3.3.20180621
$ make install
$ sudo chown -R root:root /export/apps/phyml/3.3.20180621