nQuire

A statistical framework for ploidy estimation using NGS short-read data.

• Version: git-a990a88e
• Added: May, 2021
• Link: https://github.com/clwgg/nQuire

See which versions of nQuire are available:

$ module avail nQuire

Load one version into your environment and run it:

$ module load nQuire/git-a990a88e
$ nQuire

Note: you can control the number of CPU threads used by nQuire with the -t option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone --recursive https://github.com/clwgg/nQuire
$ cd nQuire
$ make submodules
$ make
$ sudo mkdir -p /export/apps/nQuire/git-a990a88e/bin
$ sudo cp nQuire /export/apps/nQuire/git-a990a88e/bin
$ sudo cp README.org LICENSE /export/apps/nQuire/git-a990a88e