See versions which are available:
$ module avail ngs-tools
Load one version into your environment and run it:
$ module load ngs-tools/3.0.0 $ sra-search $ compute-coverage
Notes from the sysadmin during installation:
$ cd /tmp $ git clone https://github.com/ncbi/ngs-tools.git -b 3.0.0 $ cd ngs-tools $ scl enable devtoolset-7 bash $ ./configure --prefix=/export/apps/ngs-tools/3.0.0 --with-ncbi-vdb-sources=/export/apps/ncbi-vdb/3.0.0 --with-ncbi-vdb-build=/export/apps/ncbi-vdb/3.0.0 --with-sra-tools-build=/export/apps/sra-tools/3.0.0 --build-prefix=/tmp/foo $ make # errors the first time...? $ make $ sudo mkdir -p /export/apps/ngs-tools/3.0.0 $ sudo chown aorth /export/apps/ngs-tools/3.0.0 $ make install $ sudo chown -R root:root /export/apps/ngs-tools/3.0.0
Requires ncbi-vdb and sra-tools also (compiled separately into /export/apps).