nanoqc

Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC.

• Version: git-a7bcbdce
• Added: December, 2023
• Link: https://github.com/wdecoster/nanoQC

See versions that are available:

$ module avail nanoqc

Load one version into your environment and run it:

$ module load nanoqc/git-a7bcbdce
$ nanoQC

Notes from the sysadmin during installation.

$ cd /tmp
$ git clone https://github.com/wdecoster/nanoQC.git
$ cd nanoQC
$ sudo mkdir -p /export/apps/nanoqc/git-a7bcbdce
$ sudo chown aorth /export/apps/nanoqc/git-a7bcbdce
$ module load python/3.9
$ python -m venv /export/apps/nanoqc/git-a7bcbdce
$ source /export/apps/nanoqc/git-a7bcbdce/venv/bin/activate
$ pip install --upgrade pip wheel setuptools
$ python setup.py install
$ sudo chown -R root:root /export/apps/nanoqc/git-a7bcbdce