mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.

• Version: 0.2.9
• Added: September, 2020
• Link: https://github.com/brentp/mosdepth

See which versions of mosdepth are available:

$ module avail mosdepth

Load one version into your environment and run it:

$ module load mosdepth/0.2.9
$ mosdepth

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/brentp/mosdepth/releases/download/v0.2.9/mosdepth
$ sudo mkdir -p /export/apps/mosdepth/0.2.9
$ chmod +x mosdepth
$ sudo cp mosdepth /export/apps/mosdepth/0.2.9