mlst

Scan contig files against PubMLST typing schemes.

• Version: 2.23.0
• Added: February, 2025
• Link: https://github.com/tseemann/mlst

See which versions are available:

$ module avail mlst

Load one version into your environment and run it:

$ module load mlst/2.23.0
$ mlst

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/tseemann/mlst.git -b v2.23.0
$ cd mlst
$ sudo dnf install perl-Moo perl-List-MoreUtils perl-JSON
$ sudo mkdir -p /export/apps/mlst
$ sudo cp -r . /export/apps/mlst/2.23.0