mirdeep2

miRDeep2 discovers active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, …).

• Latest version: 0.1.3
• Added: April, 2020
• Link: https://github.com/rajewsky-lab/mirdeep2

See versions of mirdeep2 which are available:

$ module avail mirdeep2

Load one version into your environment and run it:

$ module load mirdeep2/0.1.3
$ miRDeep2.pl

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/rajewsky-lab/mirdeep2/archive/v0.1.3.tar.gz
$ tar xf v0.1.3.tar.gz
$ sudo yum install perl-PDF-API2.noarch
$ cd mirdeep2-0.1.3
$ touch install_successful
$ sudo mkdir -p /export/apps/mirdeep2/0.1.3
$ sudo cp -r * /export/apps/mirdeep2/0.1.3