MapSplice

MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome.

• Version: 2.2.0
• Added: March, 2016
• Link: http://www.netlab.uky.edu/p/bioinfo/MapSplice2

See which versions of mapsplice are available:

$ module avail mapsplice

Load mapsplice

$ module load mapsplice/2.2.0

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://protocols.netlab.uky.edu/~zeng/MapSplice-v2.2.0.zip
$ unzip MapSplice-v2.2.0.zip
$ cd MapSplice-v2.2.0
$ scl enable devtoolset-2 bash
$ module load samtools/1.2 bowtie/1.1.2
$ make
$ sudo cp -r bin/* /export/apps/mapsplice/2.2.0/