krona

Interactively explore metagenomes and more from a web browser.

• Version: 2.8.1
• Added: March, 2022
• Link: https://github.com/marbl/Krona

See which versions are available:

$ module avail krona

Load one version into your environment and run it:

$ module load krona/2.8.1
$ ktClassifyBLAST

Databases are in /export/apps/krona/2.8.1/taxonomy. See the documentation for more information.

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/marbl/Krona/releases/download/v2.8.1/KronaTools-2.8.1.tar
$ tar xf KronaTools-2.8.1.tar 
$ cd KronaTools-2.8.1
$ sudo mkdir -p /export/apps/krona/2.8.1
$ sudo chown aorth /export/apps/krona/2.8.1
$ chmod 755 scripts/*.pl
$ chmod 644 lib/KronaTools.pm
$ cp -r *  /export/apps/krona/2.8.1
$ cd /export/apps/krona/2.8.1
$ ./install.pl --prefix=/export/apps/krona/2.8.1
$ ./updateTaxonomy.sh
$ ./updateAccessions.sh
$ sudo chown -R root:root /export/apps/krona/2.8.1