KmerGenie

KmerGenie estimates the best k-mer length for genome de novo assembly.

• Version: 1.7044
• Added: February, 2017
• Updated: May, 2017
• Link: http://kmergenie.bx.psu.edu/

See which versions of kmergenie are available:

$ module avail kmergenie

Load kmergenie

$ module load kmergenie/1.7044

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://kmergenie.bx.psu.edu/kmergenie-1.7044.tar.gz
$ tar xf kmergenie-1.7044.tar.gz
$ cd kmergenie-1.7044
$ sudo mkdir -p /export/apps/kmergenie/1.7044
$ sudo chown aorth /export/apps/kmergenie/1.7044
$ module load python/2.7.8 R/3.3.3
$ make
$ python setup.py install --prefix=/export/apps/kmergenie/1.7044
$ sudo chown -R root:root /export/apps/kmergenie/1.7044