kmer-ssr

Fast, Accurate, and Complete SSR Detection in Genomic Sequences.

• Version: git-4043c0e7
• Added: November, 2017
• Link: https://github.com/ridgelab/Kmer-SSR

See which versions of kmer-ssr are available:

$ module avail kmer-ssr

Load kmer-ssr in your environment and run it:

$ module load kmer-ssr/git-4043c0e7
$ kmer-ssr

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/ridgelab/Kmer-SSR.git
$ scl enable devtoolset-4 bash
$ sudo mkdir -p /export/apps/kmer-ssr/git-4043c0e7/bin
$ sudo chown aorth /export/apps/kmer-ssr/git-4043c0e7/bin
$ sed -i 's/PREFIX=\/usr\/local\/bin/PREFIX=\/export\/apps\/kmer-ssr\/git-4043c0e7\/bin/' Makefile
$ make install
$ sudo chown root:root /export/apps/kmer-ssr/git-4043c0e7/bin/kmer-ssr
$ sudo chmod 755 /export/apps/kmer-ssr/git-4043c0e7/bin/kmer-ssr