kleborate

Kleborate was primarily developed to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC).

• Version: 3.2.4
• Added: August, 2025
• Link: https://github.com/klebgenomics/Kleborate

See which versions are available:

$ module avail kleborate

Load one version into your environment and run it:

$ module load kleborate/3.2.4
$ kleborate -h

Notes from the sysadmin during installation:

$ module load python/3.10
$ sudo mkdir -p /export/apps/kleborate/3.2.4
$ sudo chown -R aorth:aorth /export/apps/kleborate/3.2.4
$ python -m venv /export/apps/kleborate/3.2.4
$ source /export/apps/kleborate/3.2.4/bin/activate
$ python -m pip install -U pip setuptools wheel
$ python -m pip install -U kleborate
$ sudo chown -R root:root /export/apps/kleborate/3.2.4