Visualization and analysis software for Hi-C data
See versions of juicebox which are available:
$ module avail juicebox
Load one version into your environment and run it:
$ module load juicebox/1.11.08 $ juicebox
Note: Juicebox is a graphical application. You must enable X11 forwarding in your SSH client when connecting to HPC in order to use it.
Notes from the sysadmin during installation:
$ wget https://s3.amazonaws.com/hicfiles.tc4ga.com/public/Juicebox/Juicebox_1.11.08.jar $ sudo mkdir -p /export/apps/juicebox/1.11.08 $ sudo cp ~/Juicebox_1.11.08.jar /export/apps/juicebox/1.11.08
I created a generic juicebox wrapper for Juicebox_1.11.08.jar, as it must otherwise be run with java -jar .. and is rather user-unfriendly.
/export/apps/juicebox/1.11.08/juicebox:
#!/usr/bin/env bash readonly PREFIX=$(dirname $0) java -jar $PREFIX/Juicebox_1.11.08.jar $*