Jellyfish

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.

• Latest version: 2.3.0
• Added: March, 2015
• Updated: October, 2020
• Link: https://github.com/gmarcais/Jellyfish

See versions of jellyfish which are available:

$ module avail jellyfish

Load one version of jellyfish into your environment and run it:

$ module load jellyfish/2.3.0
$ jellyfish

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-linux
$ chmod +x jellyfish-linux
$ sudo mkdir -p /export/apps/jellyfish/2.3.0/bin
$ sudo cp jellyfish-linux /export/apps/jellyfish/2.3.0/bin/jellyfish