iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
See versions of ivar that are available:
$ module avail ivar
Load one version into your environment and run it:
$ module load ivar/1.3.1 $ ivar
Notes from the sysadmin during installation.
$ cd /tmp $ wget https://github.com/andersen-lab/ivar/archive/refs/tags/v1.3.1.tar.gz $ tar xf v1.3.1.tar.gz $ cd ivar-1.3.1 # iVar needs GCC >= 5.0.0, CentOS 7 has 4.8.5 $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-c++ $ scl enable devtoolset-7 bash $ ./autogen.sh $ module load htslib/1.11 $ ./configure --with-hts=/export/apps/htslib/1.11 --prefix=/export/apps/ivar/1.3.1 $ make $ sudo mkdir -p /export/apps/ivar/1.3.1 $ sudo chown aorth /export/apps/ivar/1.3.1 $ make install $ sudo chown -R root:root /export/apps/ivar/1.3.1