Bioinformatics tool to find integrons in bacterial genomes.
See which versions are available:
$ module avail integron-finder
Load one version into your environment and run it:
$ module load integron-finder/2.0.2 $ integron_finder
Note: you can control the number of CPU threads used with the --cpu option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.
Notes from the sysadmin during installation:
$ sudo mkdir -p /export/apps/integron-finder/2.0.2 $ sudo chown aorth /export/apps/integron-finder/2.0.2 $ module load python/3.9 $ python -m venv /export/apps/integron-finder/2.0.2 $ source /export/apps/integron-finder/2.0.2/bin/activate $ pip install integron_finder==2.0.2 $ sudo chown -R root:root /export/apps/integron-finder/2.0.2