Integrative Genomics Viewer (IGV) Tools

Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

• Latest Version: 2.3.98
• Updated: December, 2017
• Link: https://software.broadinstitute.org/software/igv

See which versions of igvtools are available:

$ module avail igvtools

Load one version into your environment and run it:

$ module load igvtools/2.3.98
$ igvtools

Notes from the sysadmin during installation:

$ wget http://data.broadinstitute.org/igv/projects/downloads/2.3/igvtools_2.3.98.zip
$ unzip igvtools_2.3.98.zip
$ sudo mkdir -p /export/apps/igvtools/2.3.98
$ sudo cp -r IGVTools/* /export/apps/igvtools/2.3.98
$ sudo chmod -x /export/apps/igvtools/2.3.98/*.bat /export/apps/igvtools/2.3.98/*.command