Integrative Genomics Viewer (IGV)

Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

• Latest Version: 2.4.5
• Added: June, 2014
• Updated: February, 2017
• Link: https://software.broadinstitute.org/software/igv

See which versions of IGV are available:

$ module avail igv

Load one version into your environment and run it:

$ module load igv/2.4.5
$ igv.sh

Notes from the sysadmin during installation:

$ wget http://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_2.4.5.zip
$ sudo mkdir -p /export/apps/igv/2.4.5
$ sudo cp -r IGV_2.4.5/*  /export/apps/igv/2.4.5
$ sudo chmod -x /export/apps/igv/2.4.5/igv.{bat,command}