IgSimulator is a versatile tool for simulation of immunoglobulin repertoire.
See which versions of igsimulator are available:
$ module avail igsimulator
Load one version into your environment and run it:
$ module load igsimulator/git-c3778b74 $ ig_simulator.py
Notes from the sysadmin during installation:
$ cd /tmp $ git clone https://github.com/yana-safonova/ig_simulator.git $ cd ig_simulator $ scl enable devtoolset-7 bash $ make $ sudo mkdir -p /export/apps/igsimulator/git-c3778b74 $ sudo chown aorth /export/apps/igsimulator/git-c3778b74 $ python2 -m virtualenv /export/apps/igsimulator/git-c3778b74/venv $ source /export/apps/igsimulator/git-c3778b74/venv/bin/activate $ pip install --upgrade setuptools pip $ pip install biopython matplotlib $ ./ig_simulator.py --test $ sudo cp -r * /export/apps/igsimulator/git-c3778b74 $ sudo chown -R root:root /export/apps/igsimulator/git-c3778b74