IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences but has recently been extended to perform analysis for T cell receptor (TR) sequences.
See which versions of igblast are available:
$ module avail igblast
Load one version into your environment and run it:
$ module load igblast/1.10.0 $ igblastn $ igblastp
Notes from the sysadmin during installation:
$ cd /tmp $ wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.10.0/ncbi-igblast-1.10.0-x64-linux.tar.gz $ tar xf ncbi-igblast-1.10.0-x64-linux.tar.gz $ sudo mkdir -p /export/apps/igblast/1.10.0 $ sudo mkdir -p /export/apps/igblast/1.10.0/data $ sudo cp -r ncbi-igblast-1.10.0/* /export/apps/igblast/1.10.0 $ sudo mkdir /export/apps/igblast/1.10.0/data $ sudo chown aorth /export/apps/igblast/1.10.0/data $ cd /export/apps/igblast/1.10.0/data $ wget -r -nH --cut-dirs=4 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data $ wget -r -nH --cut-dirs=4 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database $ wget -r -nH --cut-dirs=4 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file $ sudo chown -R root:root /export/apps/igblast/1.10.0/data