hmmIBD

A hidden Markov model for detecting segments of shared ancestry (identity by descent) in genetic sequence data.

• Version: 2.0.4
• Added: May, 2021
• Link: https://github.com/glipsnort/hmmIBD

See which versions of hmmIBD are available:

$ module avail hmmIBD

Load one version of hmmIBD into your environment and run it:

$ module load hmmIBD/2.0.4

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/glipsnort/hmmIBD.git -b v2.0.4
$ cd hmmIBD
$ scl enable devtoolset-7 bash
$ cc -o hmmIBD -O3 -lm -Wall hmmIBD.c
$ sudo mkdir -p /export/apps/hmmIBD/2.0.4/bin
$ sudo cp hmmIBD /export/apps/hmmIBD/2.0.4/bin
$ sudo cp -r LICENSE README.md samp_data /export/apps/hmmIBD/2.0.4