HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
See which versions of hmmer are available:
$ module avail hmmer
Load a version of hmmer into your environment:
$ module load hmmer/3.3
Notes from the sysadmin during installation:
$ cd /tmp $ wget http://eddylab.org/software/hmmer/hmmer.tar.gz $ tar xf hmmer.tar.gz $ cd hmmer-3.3/ $ scl enable devtoolset-7 bash $ ./configure --prefix /export/apps/hmmer/3.3 $ make $ make check $ sudo mkdir -p /export/apps/hmmer/3.3 $ sudo chown aorth /export/apps/hmmer/3.3 $ make install $ sudo chown -R root:root /export/apps/hmmer/3.3