HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads to a population of human genomes.
See available versions of hisat2:
$ module avail hisat2
Load one version into your environment and run it:
$ module load hisat2/2.1.0 $ hisat2
Notes from the sysadmin during installation:
$ cd /tmp $ wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip $ unzip hisat2-2.1.0-Linux_x86_64.zip $ sudo cp -r hisat2-2.1.0 /export/apps/hisat2/2.1.0