hapflk

hapflk is a software implementing the hapFLK and FLK tests for the detection of selection signatures based on multiple population genotyping data.

• Version: 1.4
• Added: October, 2017
• Link: https://forge-dga.jouy.inra.fr/projects/hapflk

See versions of hapflk which are available:

$ module avail hapflk

Load one version into your environment and run it:

$ module load hapflk/1.4
$ hapflk --help

Notes from the sysadmin during installation:

$ cd /tmp
$ sudo mkdir -p /export/apps/hapflk/1.4
$ sudo chown aorth /export/apps/hapflk/1.4
$ module load python/2.7.13
$ python -m virtualenv /export/apps/hapflk/1.4
$ . /export/apps/hapflk/1.4/bin/activate
$ pip install numpy scipy
$ pip install hapflk
$ sudo chown -R root:root /export/apps/hapflk/1.4