GMAP-GSNAP

A Genomic Mapping and Alignment Program(GMAP) for mRNA and EST Sequences and Genomic Short-read Nucleotide Alignment Program(GSNAP).

• Version: 2015-12-31
• Added: March, 2016
• Link: http://research-pub.gene.com/gmap/

See which versions of gmap are available:

$ module avail gmap

Load gmap

$ module load gmap/2015-12-31

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-12-31.v9.tar.gz
$ tar -xvf gmap-gsnap-2015-12-31.v9.tar.gz
$ cd gmap-2015-12-31/
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/gmap/2015-12-31
$ sudo chown joguya:joguya /export/apps/gmap/2015-12-31
$ ./configure --prefix=/export/apps/gmap/2015-12-31
$ module load openmpi/1.8.2
$ make
$ make install
$ sudo chown -R root:root /export/apps/gmap/2015-12-31