GassFlow

GassFlow(Genome Annotation based on Species Similarity) is a computational tool to annotate a eukaryotic genome based on only the annotations from another similar species.

• Version: 1.0
• Added: February, 2017
• Link: https://gassflow.codeplex.com/

See which versions of gassflow are available:

$ module avail gassflow

Load gassflow/1.0

$ module load gassflow/1.0

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- "https://download-codeplex.sec.s-msft.com/Download/Release?ProjectName=gassflow&DownloadId=1570212&FileTime=131075185544670000&Build=21031" | tar zxv
$ tar -xvf GassFlow_Reference_Based_Version-1.0.tar.gz 
$ sudo cp -v dynamic_results_filter.py GassFlow_Reference.py GassFlow_Refe.sh remove_bad_seq.py remove_duplicate_transcript.py /export/apps/gassflow/1.0/