fastq-scan reads a FASTQ from STDIN and outputs summary statistics (read lengths, per-read qualities, per-base qualities) in JSON format.
See versions that are available:
$ module avail fastq-scan
Load one version into your environment and run it:
$ module load fastq-scan/1.0.1 $ fastq-scan
Notes from the sysadmin during installation.
$ cd /tmp $ git clone https://github.com/rpetit3/fastq-scan.git -b v1.0.1 $ cd fastq-scan $ make $ sudo mkdir -p /export/apps/fastq-scan/1.0.1/bin $ sudo cp fastq-scan /export/apps/fastq-scan/1.0.1/bin