A simple program to demultiplex Illumina FASTQ files based on barcodes in the FASTQ headers.
See available versions:
$ module avail fastq_demux
Load one version into your environment and run it:
$ module load fastq_demux/git-dff5823f $ fastq_demux
Notes from the sysadmin during installation:
$ module load python/3.10 $ sudo mkdir -p /export/apps/fastq_demux/git-dff5823f $ sudo chown aorth /export/apps/fastq_demux/git-dff5823f $ python -m venv /export/apps/fastq_demux/git-dff5823f/.venv $ source /export/apps/fastq_demux/git-dff5823f/.venv/bin/activate $ python -m pip install -U pip setuptools wheel $ cd /var/scratch $ git clone https://github.com/Molmed/fastq_demux $ pip install -r requirements/prod . $ sudo chown -R root:root /export/apps/fastq_demux/git-dff5823f