fastPHASE

fastPHASE is a program to estimate missing genotypes and unobserved haplotypes.

• Latest version: 1.4.8
• Added: July, 2017
• Link: http://scheet.org/software.html

See versions of fastPHASE which are available:

$ module avail fastPHASE

Load and run:

$ module load fastPHASE/1.4.8
$ fastPHASE

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://scheet.org/code/Linuxfp.tar.gz
$ tar xf Linuxfp.tar.gz
$ chmod +x fastPHASE
# check which version this is
$ ./fastPHASE -h
$ sudo mkdir -p /export/apps/fastPHASE/1.4.8/bin
$ sudo cp fastPHASE /export/apps/fastPHASE/1.4.8/bin