Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
See which versions are available:
$ module avail ete
Load one version into your environment and run it:
$ module load ete/3.1.2 $ ete3
Notes from the sysadmin during installation:
$ sudo mkdir -p /export/apps/ete/3.1.2 $ sudo chown aorth /export/apps/ete/3.1.2 $ module load python/3.9 $ python -m venv /export/apps/ete/3.1.2 $ source /export/apps/ete/3.1.2/bin/activate $ pip install --upgrade setuptools pip $ pip install ete3 six numpy lxml pyqt5 $ sudo chown -R root:root /export/apps/ete/3.1.2
Note this discussion about problems with PyQt4: https://github.com/etetoolkit/ete/issues/195