ClonalFrameML

ClonalFrameML performs efficient inference of recombination in bacterial genomes.

• Version: 1.0
• Added: November, 2015
• Link: https://github.com/xavierdidelot/ClonalFrameML

See versions of ClonalFrameML which are available:

$ module avail clonalframeml

Load and run ClonalFrameML:

$ module load clonalframeml/1.2
$ ClonalFrameML

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/xavierdidelot/ClonalFrameML/archive/v1.0.tar.gz
$ tar -xvf v1.0.tar.gz
$ cd ClonalFrameML-1.0/src
$ make
$ sudo mkdir -p /export/apps/clonalframeml/1.0/
$ sudo cp ClonalFrameML /export/apps/clonalframeml/1.0/