CEGMA

CEGMA (Core Eukaryotic Genes Mapping Approach) is a software package for building a highly reliable set of gene annotations in the absence of experimental data.

• Version: v2.5
• Added: November, 2014
• Link: http://korflab.ucdavis.edu/Datasets/cegma/

$ module avail cegma

$ module load cegma/v2.5
$ cegma -g $CEGMA/sample/sample.dna -p $CEGMA/sample/sample.prot

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/KorfLab/CEGMA_v2.git
$ cd CEGMA_v2
$ git checkout v2.5
$ make
$ sudo mkdir -p /export/apps/cegma/v2.5
$ sudo cp -rv * /export/apps/cegma/v2.5