CD-HIT

A program for clustering and comparing protein or nucleotide sequences.

• Version: 4.8.1
• Added: August, 2016
• Updated: March, 2021
• Link: https://github.com/weizhongli/cdhit

See which versions of cd-hit are available:

$ module avail cd-hit

Load one version into your environment and run it:

$ module load cd-hit/4.8.1
$ cd-hit

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.tar.gz
$ tar xf cd-hit-v4.8.1-2019-0228.tar.gz 
$ cd cd-hit-v4.8.1-2019-0228
$ make
$ sudo mkdir -p /export/apps/cd-hit/4.8.1
$ sudo chown aorth /export/apps/cd-hit/4.8.1
$ PREFIX=/export/apps/cd-hit/4.8.1 make install
$ sudo chown -R root:root /export/apps/cd-hit/4.8.1