bmtagger

Best Match Tagger for removing human reads from metagenomics datasets.

• Version: 0.3.102.4
• Added: March, 2022
• Link: https://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/README.bmtagger.txt

See versions which are available:

$ module avail bmtagger

Load one version into your environment and run it:

$ module load bmtagger/0.3.102.4
$ bmtagger.sh

Notes from the sysadmin during installation:

$ wget https://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/bmtools.tar.gz
$ tar xf bmtools.tar.gz
$ cd bmtools
$ make
$ sudo mkdir -p /export/apps/bmtagger/0.3.102.4/bin
$ sudo chown -R aorth:aorth /export/apps/bmtagger/0.3.102.4/bin
$ find bmtagger -type f -executable -exec cp {} /export/apps/bmtagger/0.3.102.4/bin \;
$ sudo chown -R root:root /export/apps/bmtagger/0.3.102.4