BitSeq

Transcript isoform level expression and differential expression estimation for RNA-seq.

• Version: 0.7.5
• Added: March, 2016
• Link: https://bitseq.github.io/

See which versions of bitseq are available:

$ module avail bitseq

Load bitseq

$ module load bitseq/0.7.5

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/BitSeq/BitSeq/archive/v0.7.5.tar.gz
$ tar -xvf v0.7.5.tar.gz
$ cd BitSeq-0.7.5/
$ scl enable devtoolset-2 bash
$ module load samtools/1.2
$ sudo mkdir -p /export/apps/bitseq/0.7.5
$ sudo cp -r bin/* biocUpdate.sh checkTR.py extractTranscriptInfo.py parseAlignment.py releaseDo.sh /export/apps/bitseq/0.7.5/