bam-readcount

The purpose of this program is to generate metrics at single nucleotide positions.

• Version: 0.8.0
• Added: May, 2017
• Link: https://github.com/genome/bam-readcount

See which versions of bam-readcount are available:

$ module avail bam-readcount

Load bamtools

$ module load bam-readcount/0.8.0

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/genome/bam-readcount.git
$ cd bam-readcount
$ git checkout v0.8.0
$ mkdir build
$ cd build
$ cmake ..
$ make
$ sudo mkdir -p /export/apps/bam-readcount/0.8.0
$ sudo cp bin/bam-readcount /export/apps/bam-readcount/0.8.0