ANGSD

ANGSD(Analysis of Next Generation Sequencing Data) is a software for analyzing next generation sequencing data.

• Version: 0.910
• Added: December, 2015
• Link: http://www.popgen.dk/angsd/

See versions of angsd which are available:

$ module avail angsd

Load and run angsd:

$ module load angsd/0.910
$ angsd

Notes from the sysadmin during installation:

$ cd /tmp
$ scl enable devtoolset-2 bash
$ wget http://popgen.dk/software/download/angsd/angsd0.910.tar.gz
$ tar -xvf angsd0.910.tar.gz
$ cd angsd-0.910
$ sudo mkdir -p /export/apps/angsd/0.910
$ make HTSSRC=/export/apps/htslib/1.2.1
$ sudo cp -r . /export/apps/angsd/0.910/