ADMIXTURE

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.

• Version: 1.3.0
• Added: January, 2016
• Link: https://www.genetics.ucla.edu/software/admixture/index.html

See versions of admixture which are available:

$ module avail admixture

Load and run admixture:

$ module load admixture/1.3.0
$ admixture

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://www.genetics.ucla.edu/software/admixture/binaries/admixture_linux-1.3.0.tar.gz
$ tar -xvf admixture_linux-1.3.0.tar.gz
$ sudo mkdir /export/apps/admixture/1.3.0/
$ cd admixture_linux-1.3.0/
$ sudo cp -r . /export/apps/admixture/1.3.0/