AdapterRemoval

AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.

• Version: 2.3.1
• Added: September, 2014
• Updated: August, 2020
• Link: https://github.com/MikkelSchubert/adapterremoval

See versions of AdapterRemoval which are available:

$ module avail AdapterRemoval

Load one version into your environment and run it:

$ module load AdapterRemoval/2.3.1
$ AdapterRemoval

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/MikkelSchubert/adapterremoval/archive/v2.3.1.tar.gz
$ tar xf v2.3.1.tar.gz
$ cd adapterremoval-2.3.1
$ make
$ sudo mkdir -p /export/apps/AdapterRemoval/2.3.1
$ sudo chown aorth /export/apps/AdapterRemoval/2.3.1
$ make PREFIX=/export/apps/AdapterRemoval/2.3.1 install
$ sudo chown -R root:root /export/apps/AdapterRemoval/2.3.1